References
Data Integration, Manipulation and Visualization of Phylogenetic Trees
Preface
About the Author
Part I: Tree data input, output, and manipulation
1
Importing Tree with Data
2
Manipulating Tree with Data
3
Exporting tree with data
Part II: Tree data visualization and annotation
4
Phylogenetic Tree Visualization
5
Interactive
ggtree
6
Phylogenetic Tree Annotation
7
Visual Exploration of Phylogenetic Trees
8
Plotting tree with data
9
Annotating Tree with Silhouette Images and Sub-plots
10
ggtree for Other Tree-like Objects
Part III: ggtree extensions
11
ggtreeExtra for Presenting Data on a Circular Layout
12
Other ggtree Extensions
Part IV: Miscellaneous topics
13
ggtree Utilities
14
Gallery of Reproducible Examples
Appendix
(APPENDIX) Appendix
15
Related Tools
16
Figures and Tables
References
References
16
Figures and Tables