geom_seed.Rd
Highlighting the seed in miRNA sequences
geom_seed(seed, star = FALSE)
seed | a character string.Specifying the miRNA seed sequence like 'GAGGUAG'. |
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star | a logical value indicating whether asterisks should be disaplayed. |
a ggplot layer
Lang Zhou
miRNA_sequences <- system.file("extdata/seedSample.fa", package="ggmsa") ggmsa(miRNA_sequences, font = 'DroidSansMono', color = "Chemistry_NT", none_bg = TRUE) + geom_seed(seed = "GAGGUAG", star = FALSE)ggmsa(miRNA_sequences, font = 'DroidSansMono', color = "Chemistry_NT") + geom_seed(seed = "GAGGUAG", star = TRUE)