Preface
1 Introduction
- 1.1 Terminology
2 Functional Enrichment Analysis Methods
3 Universal enrichment analysis
4 Disease analysis
5 Gene Ontology Analysis
6 KEGG analysis
7 MSigDb analysis
8 Reactome pathway analysis
9 MeSH Enrichment Analysis
10 Functional enrichment analysis of genomic coordinations
11 Biological theme comparison
- 11.1 Formula interface of compareCluster
- 11.2 Visualization of profile comparison
12 Visualization of Functional Enrichment Result
13 dplyr verbs for clusterProfiler
14 Useful utilities
- 14.1 bitr: Biological Id TranslatoR
  - 14.1.1 bitr_kegg: converting biological IDs using KEGG API
- 14.2 setReadable: translating gene IDs to human readable symbols
Appendix
References

clusterProfiler: universal enrichment tool for functional and comparative study

Guangchuang Yu

Preface

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