Chapter 8 Reactome pathway analysis

ReactomePA(Yu and He 2016) uses Reactome as a source of pathway data. The function call of enrichPathway and gsePathway in ReactomePA is consistent with enrichKEGG and gseKEGG.


Yu, Guangchuang, and Qing-Yu He. 2016. “ReactomePA: An R/Bioconductor Package for Reactome Pathway Analysis and Visualization.” Molecular BioSystems 12 (2): 477–79.