4 Session information
Here is the output of sessionInfo()
on the system on which this document was compiled:
#> R Under development (unstable) (2024-12-10 r87437)
#> Platform: x86_64-pc-linux-gnu
#> Running under: CentOS Linux 7 (Core)
#>
#> Matrix products: default
#> BLAS: /biostack/tools/devtools/R/devel_241212/lib64/R/lib/libRblas.so
#> LAPACK: /biostack/tools/devtools/R/devel_241212/lib64/R/lib/libRlapack.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Asia/Shanghai
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats4 stats graphics grDevices utils datasets methods
#> [8] base
#>
#> other attached packages:
#> [1] scatterpie_0.2.4 magrittr_2.0.3
#> [3] ggplot2_3.5.1 SVP_0.99.0
#> [5] scran_1.35.0 scuttle_1.17.0
#> [7] ggsc_1.5.0 SpatialExperiment_1.17.0
#> [9] SingleCellExperiment_1.29.1 SummarizedExperiment_1.37.0
#> [11] Biobase_2.67.0 GenomicRanges_1.59.1
#> [13] GenomeInfoDb_1.43.2 IRanges_2.41.2
#> [15] S4Vectors_0.45.2 BiocGenerics_0.53.3
#> [17] generics_0.1.3 MatrixGenerics_1.19.0
#> [19] matrixStats_1.4.1 bookdown_0.41
#>
#> loaded via a namespace (and not attached):
#> [1] RcppAnnoy_0.0.22 splines_4.5.0
#> [3] later_1.4.1 ggplotify_0.1.2
#> [5] tibble_3.2.1 polyclip_1.10-7
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#> [13] limma_3.63.2 plotly_4.10.4
#> [15] sass_0.4.9 rmarkdown_2.29
#> [17] jquerylib_0.1.4 yaml_2.3.10
#> [19] metapod_1.15.0 httpuv_1.6.15
#> [21] Seurat_5.1.0 sctransform_0.4.1
#> [23] spam_2.11-0 sp_2.1-4
#> [25] spatstat.sparse_3.1-0 reticulate_1.40.0
#> [27] cowplot_1.1.3 pbapply_1.7-2
#> [29] RColorBrewer_1.1-3 abind_1.4-8
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#> [55] aplot_0.2.3 UCSC.utils_1.3.0
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#> [85] scattermore_1.2 tensor_1.5
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#> [89] tidyr_1.3.1 data.table_1.16.4
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#> [93] S4Arrays_1.7.1 uwot_0.2.2
#> [95] pkgconfig_2.0.3 gtable_0.3.6
#> [97] lmtest_0.9-40 XVector_0.47.0
#> [99] htmltools_0.5.8.1 dotCall64_1.2
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#> [117] grid_4.5.0 vctrs_0.6.5
#> [119] RANN_2.6.2 promises_1.3.2
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#> [139] deldir_2.0-4 BiocParallel_1.41.0
#> [141] munsell_0.5.1 lazyeval_0.2.2
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#> [145] RcppHNSW_0.6.0 patchwork_1.3.0
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#> [149] statmod_1.5.0 shiny_1.9.1
#> [151] ROCR_1.0-11 igraph_2.1.2
#> [153] RcppParallel_5.1.9 bslib_0.8.0
#> [155] ggtree_3.15.0 fastmatch_1.1-4
#> [157] ape_5.8
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