tidy_msa

Convert msa file/object to tidy data frame.

tidy_msa(msa, start = NULL, end = NULL)

Arguments

msa	multiple sequence alignment file or sequence object in DNAStringSet, RNAStringSet, AAStringSet, BStringSet, DNAMultipleAlignment, RNAMultipleAlignment, AAMultipleAlignment, DNAbin or AAbin
start	start position to extract subset of alignment
end	end position to extract subset of alignemnt

Value

tibble data frame

Author

Guangchuang Yu

Examples

fasta <- system.file("extdata", "sample.fasta", package = "ggmsa")
aln <- tidy_msa(msa = fasta, start = 10, end = 100)