Curated database of toxin-antitoxin systems (TAS) for runing mTAS
TADB2, fasta files of TAS from collected from official website of the TADB 2.0. Last update: Oct., 2017.
TASmania. Hmm profiles of TAS.
Rfam, type I and type III TAS homologs retrieved using correponding queries from TADB2 and T1TAdb (Jan., 2022).
T1TAdb, type I fasta files of TAS. (Jan., 2022).
ICEberg, nucleotide reference sequences of mobile genetic elements (MGE). Last update: May, 2018.
Xie, Y., Wei, Y., Shen, Y., Li, X., Zhou, H., Tai, C., Deng, Z., & Ou, H. Y. (2018). TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci. Nucleic acids research, 46(D1), D749–D753. https://doi.org/10.1093/nar/gkx1033
Akarsu, H., Bordes, P., Mansour, M., Bigot, D. J., Genevaux, P., & Falquet, L. (2019). TASmania: A bacterial Toxin-Antitoxin Systems database. PLoS computational biology, 15(4), e1006946. https://doi.org/10.1371/journal.pcbi.1006946
Tourasse, N. J., & Darfeuille, F. (2021). T1TAdb: the database of type I toxin-antitoxin systems. RNA (New York, N.Y.), 27(12), 1471–1481. https://doi.org/10.1261/rna.078802.121
Liu, M., Li, X., Xie, Y., Bi, D., Sun, J., Li, J., Tai, C., Deng, Z., & Ou, H. Y. (2019). ICEberg 2.0: an updated database of bacterial integrative and conjugative elements. Nucleic acids research, 47(D1), D660–D665. https://doi.org/10.1093/nar/gky1123
Author: Zehan Dai mail: zehan.dai@outlook.com