ggmsa is designed for visualization and annotation of multiple sequence alignment. It implements functions to visualize publication-quality multiple sequence alignments (protein/DNA/RNA) in R extremely simple and powerful.
For details, please visit http://yulab-smu.top/ggmsa/
You can install
ggmsa from CRAN using
install.packages('ggmsa'). Alternatively you can grab the development version from github using devtools:
library(ggmsa) protein_sequences <- system.file("extdata", "sample.fasta", package = "ggmsa") ggmsa(protein_sequences, start = 221, end = 280, char_width = 0.5, seq_name = T) + geom_seqlogo() + geom_msaBar()
Check out the guides for learning everything there is to know about all the different features:
We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.