Data description

Inflammatory Bowel Disease example data description

NIHMS1510763-supplement-Dataset_1.xlsx: The Metabolomic Abundance Raw Matrix was downloaded from https://doi.org/10.1038/s41564-018-0306-4.

NIHMS1510763-supplement-Dataset_2.xlsx: The Metabolite Original ID and Metabolite Name Conversion Table was downloaded from https://doi.org/10.1038/s41564-018-0306-4.

NIHMS1510763-supplement-Dataset_6.xlsx: The Metagenomic Original Gene Abundance Matrix File was downloaded from https://doi.org/10.1038/s41564-018-0306-4.

enzyme_ko.txt: The ID mapping file (mapping enzymes to KEGG K-Numbers) was downloaded from https://github.com/YuLab-SMU/Supplemental-MMINP/blob/main/data/20220924_kegg/enzyme_ko.txt.

metabolwasm_expr.csv: The processed metabolomic abundance matrix file was derived from https://doi.org/10.1038/s41564-018-0306-4.

metabolwasm_meta.csv: The processed metabolomic experimental grouping information file was derived from https://doi.org/10.1038/s41564-018-0306-4.

mg.expr.csv: The processed metagenomic abundance matrix file was derived from https://doi.org/10.1038/s41564-018-0306-4.

mg.meta.csv: The processed metabolomic experimental grouping information file was derived from https://doi.org/10.1038/s41564-018-0306-4.

name_map.csv: The ID mapping file(mapping metabolites to KEGG C-Numbers) was downloaded from https://www.metaboanalyst.ca/MetaboAnalyst/resources/users/guest7299843510837833804tmp/name_map.csv.